v4.3
enviMass
enviMass
mass spec analysis workflow - version 4.4
Overview
Installation
Introduction
Data input
Topics
Examples
FAQs
Contact
About
(1) Workflow operation
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(1)
The browser interface turns gray during, e.g., data uploads, calculation sessions, parameter changes, etc.
(2)
I have been waiting for hours for calculations to finish.
(3)
I want to copy a project into another folder, onto an external drive or onto another computer.
(4)
I try to open a project which I created, but the enviMass UI in the browser turns gray or I get a message that the project cannot be opened.
(5)
I have trouble when opening older projects in newer enviMass versions.
(2) Workflow UI
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(1)
How to find target/ISTD/suspect profiles?
(2)
I cannot find/filter my target/ISTD/suspect profiles ...
(3) Workflow results
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(1)
Were intensities really normalized when using internal standard profiles?
(2)
In how far and where is the ratio between sample and blank/blind intensities used?
(3)
In how far and where is the screening cutoff score used?
(4) On data inputs
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(1)
How can I include a different set of adducts in enviMass?
(2)
How can I use a different set of isotopes in enviMass?
(3)
I do not want masses to be generated from molecular formulas for some or all of my compounds - but to use masses as inputs directly.
(4)
How can I use the same ISTD with varying concentrations for the intensity normalization?
(5) On data outputs
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(1)
How can I access the enviMass (time) profile results directly for my own analysis in R?
(2)
How can I filter and convert the enviMass (time) profile list to a matrix for further R analysis?
(3)
How can I access the enviMass target and ISTD screening results?